PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g460740.1
Common NameMTR_5g060630, MTR_5g460740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 524aa    MW: 58087.8 Da    PI: 4.9364
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g460740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.6e-17142241299
                      EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      +k+lt+sd+ +   l +p++++e +      +++ +s +l+++d +  +W+ k++y  kk ++y +t+GW++Fv+ ++L + D+vvF   ++s 
  Medtr5g460740.1 142 VKILTQSDTQSG--LFVPRECMELIfpnldLEDPMQSEKLSVTDIQDVVWTYKYSYhVKKLNSYKFTTGWSQFVRKKKLVALDSVVFI--KNSA 231
                      678877776654..899*****888**99955677999******************9999999*************************..779* PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      ++ +v+++rk
  Medtr5g460740.1 232 GKIFVGICRK 241
                      ********98 PP

2Auxin_resp43.91.1e-15265349183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafet...edsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a ++++F+vvY+P a + +Fvv ++ v +a+k+ +  Gm +k+++++    +s+++ +   Gt++ +s+   v  +   Wr+L+
  Medtr5g460740.1 265 AVELAGKNMAFQVVYYPTANWCDFVVDASVVDEAMKNGWEFGMGIKLRLNEfasSNSKKTYYqpKGTISNMSN---VPSNVPSWRMLQ 349
                      567788999**************************************98752114444444488899999998...4457788**997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-21135242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-18137241IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.419139242IPR003340B3 DNA binding domain
CDDcd100177.25E-14140240No hitNo description
SMARTSM010191.4E-8141242IPR003340B3 DNA binding domain
PfamPF023626.5E-14142241IPR003340B3 DNA binding domain
PfamPF065073.1E-13265349IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSLPQPRRVD SKIWQIRAGP AVKIPKIGSK VYYFSEGHLE HACSSPNIET ELLLCLRPPS  60
VLCIISSVDL LANLHTDEVF AKLLLTPVTT DGSVQIQEPA PPDFPDKEEN DGNNLVVQVQ  120
EPAPPEVPDE EDDDSNNLVS YVKILTQSDT QSGLFVPREC MELIFPNLDL EDPMQSEKLS  180
VTDIQDVVWT YKYSYHVKKL NSYKFTTGWS QFVRKKKLVA LDSVVFIKNS AGKIFVGICR  240
KAMYPATEEE GGKSENLTEK AVKDAVELAG KNMAFQVVYY PTANWCDFVV DASVVDEAMK  300
NGWEFGMGIK LRLNEFASSN SKKTYYQPKG TISNMSNVPS NVPSWRMLQV NWDGPDISQN  360
PNRVNPWQVD IYPIPSQSSS PLQMPHSYPP IPPPLLPFPP TKSPRLSQSS SPLQMPFSYP  420
PTPPPLLQSS MSTSSFIPMT ELPYSTIGSL NQTLLNSDTF PDGMLGASHD HLSASDLSKV  480
LSDKGDGFNR NRSMVGWSGT LCDTEPRNHN SLNSFGTNEP CTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-36937051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614872.10.0auxin response factor
RefseqXP_013454014.10.0auxin response factor
TrEMBLG7K9Y10.0G7K9Y1_MEDTR; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.14e-64auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]